Aftermath
The events at Gowrie House caused intense excitement throughout Scotland. The investigation of the circumstances was also followed with much interest in England where all the details were reported to Elizabeth's ministers. The ministers of the Kirk, whose influence in Scotland was too extensive for the king to neglect, were persuaded, but with great difficulty, to accept James's account of the occurrence. He voluntarily submitted himself to cross-examination by one of their number.
The ministers' belief, and that of their partisans, no doubt influenced by political hostility toward James, was that the king had invented the story of a conspiracy by Gowrie to cover his own design to extirpate the Ruthven family. James gave some colour to this belief, which has not been entirely abandoned, by the relentless severity with which he pursued the two younger, and unquestionably innocent, brothers of the earl. A more tangible motive for mutual discontent is to be found in the fact that the king was Gowrie's debtor to the extent of no less than £80,000 representing a sum of £48,063 due to his father while treasurer, with the interest at 10% per annum for the succeeding years. With this sum the old Earl of Gowrie, when treasurer, was forced to burden himself in order to meet the current expenses of the government. It was probably his inability to meet the obligations incurred by his father that had compelled the young earl to remain abroad; and on his return he presented a petition to the court of session, stating that he was unfit to pay any more to his creditors than he had done already, and asking to be relieved of these royal debts. In answer to his application he on 20 June 1600 obtained a protection from debt for a year.
Great efforts were made by the government to prove the complicity of others in the plot. One noted and dissolute conspirator, Sir Robert Logan of Restalrig, was posthumously convicted of having been privy to the Gowrie conspiracy on the evidence of certain letters produced by a notary, George Sprot, who swore they had been written by Logan to Gowrie and others. These letters, which are still in existence, were in fact forged by Sprot in imitation of Logan's handwriting; but the researches of Andrew Lang have shown cause for suspecting that the most important of them was either copied by Sprot from a genuine original by Logan, or that it embodied the substance of such a letter. If this is correct, it would appear that the conveyance of the king to Fast Castle, Logan's impregnable fortress on the coast of Berwickshire, was part of the plot; and it supplies, in all events, an additional piece of evidence to prove the genuineness of the Gowrie conspiracy. Robert Logan died before May 1608 the last of his line; George Sprot was hanged at the Market Cross of Edinburgh for foreknowledge of the conspiracy on 12 August 1608.
On 7 August 1600, James's Privy Council of Scotland ordered that the corpses of Gowrie and his brother should remain unburied until further decisions were made over the matter, and that no person with the name of Ruthven should approach within ten miles of the court. Orders were also sent for the apprehension of the earl's brothers William and Patrick, but they fled to England. The bodies of Gowrie and his brother Robert were disembowelled and preserved by one James Melville, who, however, was paid for his services, not by the magistrates of Perth, but by the Privy Council; and on 30 October they were sent to Edinburgh to be produced at the bar of Parliament. On 15 November, the estates of the Ruthvens were discerned by Parliament via the Forfeiture of the Earl of Gowrie Act 1600 (c. 1) to be forfeited and their family name and honours extinct.
The corpses of the Earl and his brother were hanged and quartered at the Mercat Cross in Edinburgh on 19 November 1600. Their heads were put on spikes at Edinburgh's Old Tolbooth and their arms and legs upon spikes at various locations around Perth.
Another act, the Name of Ruthven Act 1600 (c. 2) was further passed abolishing the name of Ruthven, ordering that the house wherein the tragedy happened should be levelled to the ground, and decreeing that the barony of Ruthven should henceforth be known as the barony of Huntingtower. In a letter of November 1600, the Patrick Gray, 6th Lord Gray described the aftermath of the Gowrie Conspiracy. The Ruthven family were ordered to change their surname, and the House of Ruthven near Perth was renamed as Huntingtower.
Some suspicion had fallen on Anne of Denmark, and the sisters Beatrix and Barbara Ruthven were barred from her presence. In October 1600, the French ambassador in London heard that Anne of Denmark (who was pregnant) kept to her chamber, in a state of undress, and complained of the absence of the Ruthven sisters. Some courtiers were removed from her household after the birth of her child (Prince Charles). Despite her protests, her enemy, Sir Thomas Erskine, was made captain of the royal guard.
Master John Gordon wrote to James VI about commemorating the events with verse and a monument. James VI wrote to Gordon that the master of work William Schaw would "conferre with yow thairanent, that ye maye agree upon the forme, devyse, and superscriptionis".