Independence to present
The next 30 years were a period of political turmoil. On 3 August 1975, less than one month after independence, president Ahmed Abdallah was removed from office in an armed coup and replaced with United National Front of the Comoros (FNUK) member Said Mohamed Jaffar. Months later, in January 1976, Jaffar was ousted in favour of his Minister of Defence Ali Soilihi.
The population of Mayotte voted against independence from France in three referendums during this period. The first, held on all the islands on 22 December 1974, won 63.8% support for maintaining ties with France on Mayotte; the second, held in February 1976, confirmed that vote with an overwhelming 99.4%, while the third, in April 1976, confirmed that the people of Mayotte wished to remain a French territory. The three remaining islands, ruled by President Soilihi, instituted a number of socialist and isolationist policies that soon strained relations with France. On 13 May 1978, Bob Denard, once again commissioned by the French intelligence service (SDECE), returned to overthrow President Soilihi and reinstate Abdallah with the support of the French, Rhodesian and South African governments. Ali Soilihi was captured and executed a few weeks later.
In contrast to Soilihi, Abdallah's presidency was marked by authoritarian rule and increased adherence to traditional Islam and the country was renamed the Federal Islamic Republic of the Comoros (République Fédérale Islamique des Comores; جمهورية القمر الإتحادية الإسلامية). Bob Denard served as Abdallah's first advisor; nicknamed the "Viceroy of the Comoros", he was considered the real strongman of the regime. Very close to South Africa, which financed his "presidential guard", he allowed Paris to circumvent the international embargo on the apartheid regime via Moroni. He also set up from the archipelago a permanent mercenary corps, called upon to intervene at the request of Paris or Pretoria in conflicts in Africa. Abdallah continued as president until 1989, when, fearing a probable coup, he signed a decree ordering the Presidential Guard, led by Bob Denard, to disarm the armed forces. Shortly after the signing of the decree, Abdallah was allegedly shot dead in his office by a disgruntled military officer, though later sources claim an antitank missile was launched into his bedroom and killed him.. Still, Denard was also injured; it is suspected that Abdallah's killer was a soldier under his command.
A few days later, Bob Denard was evacuated to South Africa by French paratroopers. Said Mohamed Djohar, Soilihi's older half-brother, then became president, and served until September 1995, when Bob Denard returned and attempted another coup. This time, France intervened with paratroopers and forced Denard to surrender. The French removed Djohar to Reunion, and the Paris-backed Mohamed Taki Abdoulkarim became president by election. He led the country from 1996, during a time of labour crises, government suppression, and secessionist conflicts, until his death in November 1998. He was succeeded by Interim President Tadjidine Ben Said Massounde.
The islands of Ndzwani and Mwali declared their independence from the Comoros in 1997, in an attempt to restore French rule. But France rejected their request, leading to bloody confrontations between federal troops and rebels. In April 1999, Colonel Azali Assoumani, Army Chief of Staff, seized power in a bloodless coup, overthrowing the Interim President Massounde, citing weak leadership in the face of the crisis. This was the Comoros' 18th coup, or attempted coup d'état since independence in 1975.
Assoumani failed to consolidate power and reestablish control over the islands, which was the subject of international criticism. The African Union, under the auspices of President Thabo Mbeki of South Africa, imposed sanctions on Ndzwani to help broker negotiations and effect reconciliation. Under the terms of the Fomboni Accords, signed in December 2001 by the leaders of all three islands, the official name of the country was changed to the Union of the Comoros; the new state was to be highly decentralised and the central union government would devolve most powers to the new island governments, each led by a president. The Union president, although elected by national elections, would be chosen in rotation from each of the islands every five years.
Assoumani stepped down in 2002 to run in the democratic election of the President of the Comoros, which he won. Under ongoing international pressure, as a military ruler who had originally come to power by force, and was not always democratic while in office, Assoumani led the Comoros through constitutional changes that enabled new elections. A Loi des compétences law was passed in early 2005 that defines the responsibilities of each governmental body, and is in the process of implementation. The elections in 2006 were won by Ahmed Abdallah Mohamed Sambi, a Sunni Muslim cleric nicknamed the "Ayatollah" for his time spent studying Islam in Iran. Assoumani honoured the election results, thus allowing the first peaceful and democratic exchange of power for the archipelago.
Colonel Mohammed Bacar, a French-trained former gendarme elected President of Ndzwani in 2001, refused to step down at the end of his five-year mandate. He staged a vote in June 2007 to confirm his leadership that was rejected as illegal by the Comoros federal government and the African Union. On 25 March 2008, hundreds of soldiers from the African Union and the Comoros seized rebel-held Ndzwani, generally welcomed by the population: there have been reports of hundreds, if not thousands, of people tortured during Bacar's tenure.
Some rebels were killed and injured, but there are no official figures. At least 11 civilians were wounded. Some officials were imprisoned. Bacar fled in a speedboat to Mayotte to seek asylum. Anti-French protests followed in the Comoros (see 2008 invasion of Anjouan). Bacar was eventually granted asylum in Benin.
Since independence from France, the Comoros experienced more than 20 coups or attempted coups.
Following elections in late 2010, former Vice-president Ikililou Dhoinine was inaugurated as president on 26 May 2011. Dhoinine is the first President of the Comoros from the island of Mwali. Following the 2016 elections, Azali Assoumani, from Ngazidja, became president for a third term. In 2018, Assoumani held a referendum on constitutional reform that would permit a president to serve two terms. The amendments were passed, although the vote was widely contested and boycotted by the opposition, and in April 2019, to widespread opposition, Assoumani was re-elected president to serve the first of potentially two five-year terms. In January 2020, the legislative elections in Comoros were dominated by President Azali Assoumani's party, the Convention for the Renewal of the Comoros, CRC. It took an overwhelming majority in the parliament.
In 2021, Comoros signed and ratified the Treaty on the Prohibition of Nuclear Weapons, making it a nuclear-weapon-free state. and in 2023, Comoros was invited as a non-member guest to the G7 summit in Hiroshima. On 18 February 2023 the Comoros assumed the presidency of the African Union.
In January 2024, President Azali Assoumani was re-elected with 63% of the vote in the disputed presidential election. In January 2025, the ruling party of president Azali Assoumani won parliamentary election, taking 28 out of 33 parliamentary seats. The opposition parties rejected the results.
In 2026, the Historic Sultantes of the Comoro Islands were inscribed as a UNESCO World Heritage Site, making them the first Islamic sites to be listed in the Comoros.